Package: snplist 0.18.2
Alexander Sibley
snplist: Tools to Create Gene Sets
A set of functions to create SQL tables of gene and SNP information and compose them into a SNP Set, for example to export to a PLINK set.
Authors:
snplist_0.18.2.tar.gz
snplist_0.18.2.zip(r-4.5)snplist_0.18.2.zip(r-4.4)snplist_0.18.2.zip(r-4.3)
snplist_0.18.2.tgz(r-4.4-x86_64)snplist_0.18.2.tgz(r-4.4-arm64)snplist_0.18.2.tgz(r-4.3-x86_64)snplist_0.18.2.tgz(r-4.3-arm64)
snplist_0.18.2.tar.gz(r-4.5-noble)snplist_0.18.2.tar.gz(r-4.4-noble)
snplist_0.18.2.tgz(r-4.4-emscripten)snplist_0.18.2.tgz(r-4.3-emscripten)
snplist.pdf |snplist.html✨
snplist/json (API)
NEWS
| # Install 'snplist' in R: |
| install.packages('snplist', repos = c('https://dcibioinformatics.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 years agofrom:0ab16a535c. Checks:OK: 7 WARNING: 1 NOTE: 1. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 12 2024 |
| R-4.5-win-x86_64 | NOTE | Nov 12 2024 |
| R-4.5-linux-x86_64 | WARNING | Nov 12 2024 |
| R-4.4-win-x86_64 | OK | Nov 12 2024 |
| R-4.4-mac-x86_64 | OK | Nov 12 2024 |
| R-4.4-mac-aarch64 | OK | Nov 12 2024 |
| R-4.3-win-x86_64 | OK | Nov 12 2024 |
| R-4.3-mac-x86_64 | OK | Nov 12 2024 |
| R-4.3-mac-aarch64 | OK | Nov 12 2024 |
Exports:exportPLINKSetgetBioMartDatamakeGeneSetsetGeneTablesetSNPTable
Dependencies:AnnotationDbiaskpassBiobaseBiocFileCacheBiocGenericsbiomaRtBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdigestdplyrfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDatagluehmshttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrpngprettyunitsprogresspurrrR.methodsS3R.ooR.utilsR6rappdirsRcpprlangRSQLiteS4VectorsstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrxml2XVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Tools to Create Gene Sets | snplist-package snplist |
| exportPLINKSet | exportPLINKSet |
| getBioMartData | getBioMartData |
| makeGeneSet | makeGeneSet |
| setGeneTable | setGeneTable |
| setSNPTable | setSNPTable |