Introduction | Get Gene and SNP Information | Load Packages | Set the Gene Info Table | Set the SNP Info Table | Make the SNP Sets | Save the Gene Sets |
Package: snplist 0.18.3
Alexander Sibley
snplist: Tools to Create Gene Sets
A set of functions to create SQL tables of gene and SNP information and compose them into a SNP Set, for example to export to a PLINK set.
Authors:
snplist_0.18.3.tar.gz
snplist_0.18.3.zip(r-4.7-x86_64)snplist_0.18.3.zip(r-4.7-arm64)snplist_0.18.3.zip(r-4.6-x86_64)snplist_0.18.3.zip(r-4.6-arm64)snplist_0.18.3.zip(r-4.5-x86_64)
snplist_0.18.3.tgz(r-4.6-x86_64)snplist_0.18.3.tgz(r-4.6-arm64)snplist_0.18.3.tgz(r-4.5-x86_64)snplist_0.18.3.tgz(r-4.5-arm64)
snplist_0.18.3.tar.gz(r-4.7-arm64)snplist_0.18.3.tar.gz(r-4.7-x86_64)snplist_0.18.3.tar.gz(r-4.6-arm64)snplist_0.18.3.tar.gz(r-4.6-x86_64)
snplist_0.18.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
snplist/json (API)
| # Install 'snplist' in R: |
| install.packages('snplist', repos = c('https://dcibioinformatics.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:940c55fbeb. Checks:15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 161 | ||
| linux-devel-x86_64 | OK | 189 | ||
| source / vignettes | OK | 241 | ||
| linux-release-arm64 | OK | 153 | ||
| linux-release-x86_64 | OK | 191 | ||
| macos-release-arm64 | OK | 120 | ||
| macos-release-x86_64 | OK | 469 | ||
| macos-oldrel-arm64 | OK | 175 | ||
| macos-oldrel-x86_64 | OK | 225 | ||
| windows-devel-arm64 | OK | 259 | ||
| windows-devel-x86_64 | OK | 158 | ||
| windows-release-arm64 | OK | 231 | ||
| windows-release-x86_64 | OK | 151 | ||
| windows-oldrel-x86_64 | OK | 161 | ||
| wasm-release | OK | 119 |
Exports:exportPLINKSetgetBioMartDatamakeGeneSetsetGeneTablesetSNPTable
Dependencies:AnnotationDbiaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsbiomaRtBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfastmapfilelockgenericsgluehmshttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngprettyunitsprogresspurrrR.methodsS3R.ooR.utilsR6RcpprlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrxml2XVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Tools to Create Gene Sets | snplist-package snplist |
| exportPLINKSet | exportPLINKSet |
| getBioMartData | getBioMartData |
| makeGeneSet | makeGeneSet |
| setGeneTable | setGeneTable |
| setSNPTable | setSNPTable |