{
  "_id": "6ac0c5c891601a2ad2998ab8",
  "Package": "snplist",
  "Type": "Package",
  "Title": "Tools to Create Gene Sets",
  "Version": "0.18.3",
  "Date": "2025-04-21",
  "Authors@R": "c(person(given = \"Chanhee\",\nfamily = \"Yi\",\nrole = \"aut\"),\nperson(given = \"Alexander\",\nfamily = \"Sibley\",\nrole = c(\"aut\", \"cre\"),\nemail = \"dcibioinformatics@duke.edu\"),\nperson(given = \"Kouros\",\nfamily = \"Owzar\",\nrole = \"aut\"))",
  "Author": "Chanhee Yi [aut], Alexander Sibley [aut, cre], Kouros Owzar\n[aut]",
  "Maintainer": "Alexander Sibley <dcibioinformatics@duke.edu>",
  "Description": "A set of functions to create SQL tables of gene and SNP\ninformation and compose them into a SNP Set, for example to\nexport to a PLINK set.",
  "License": "GPL-3",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-03 08:58:38 UTC",
    "User": "root"
  },
  "Config/pak/sysreqs": "libicu-dev libpng-dev libxml2-dev libssl-dev\nzlib1g-dev",
  "Repository": "https://dcibioinformatics.r-universe.dev",
  "Date/Publication": "2025-04-21 18:40:02 UTC",
  "RemoteUrl": "https://github.com/cran/snplist",
  "RemoteRef": "HEAD",
  "RemoteSha": "940c55fbeb13a5675d5eaeb20eda1c8885001e39",
  "_user": "dcibioinformatics",
  "_type": "src",
  "_file": "snplist_0.18.3.tar.gz",
  "_fileid": "https://r2.ropensci.org/0fc37ee85f3fba05ea7e633bcb87e3008f01c87189cfe5a93c89fa68315699e0",
  "_filesize": 351917,
  "_sha256": "0fc37ee85f3fba05ea7e633bcb87e3008f01c87189cfe5a93c89fa68315699e0",
  "_expires": "2027-01-11T09:07:18.000Z",
  "_created": "2026-10-03T08:58:38.000Z",
  "_published": "2026-10-03T09:07:20.126Z",
  "_jobs": [
    {
      "job": 111170190977,
      "time": 161,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11269948070"
    },
    {
      "job": 111170191034,
      "time": 189,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11269059493"
    },
    {
      "job": 111170190990,
      "time": 153,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11269873347"
    },
    {
      "job": 111170191045,
      "time": 191,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11270002974"
    },
    {
      "job": 111170190999,
      "time": 175,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11270107855"
    },
    {
      "job": 111170191068,
      "time": 225,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11269294213"
    },
    {
      "job": 111170191054,
      "time": 120,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11270165080"
    },
    {
      "job": 111170191038,
      "time": 469,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11269179741"
    },
    {
      "job": 111169557342,
      "time": 241,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11270122408"
    },
    {
      "job": 111170190952,
      "time": 119,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11270052945"
    },
    {
      "job": 111170191040,
      "time": 259,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11269104508"
    },
    {
      "job": 111170191127,
      "time": 158,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11270012961"
    },
    {
      "job": 111170191032,
      "time": 161,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11270062946"
    },
    {
      "job": 111170191048,
      "time": 231,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11269324105"
    },
    {
      "job": 111170190986,
      "time": 151,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11269843304"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/dcibioinformatics/actions/runs/37111244262",
  "_status": "success",
  "_upstream": "https://github.com/cran/snplist",
  "_commit": {
    "id": "940c55fbeb13a5675d5eaeb20eda1c8885001e39",
    "author": "Alexander Sibley <dcibioinformatics@duke.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.18.3\n",
    "time": 1745260802
  },
  "_maintainer": {
    "name": "Alexander Sibley",
    "email": "dcibioinformatics@duke.edu"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.0.0",
      "role": "Depends"
    },
    {
      "package": "RSQLite",
      "version": ">= 1.1",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "biomaRt",
      "version": ">= 2.16.0",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.10.5",
      "role": "Imports"
    },
    {
      "package": "R.utils",
      "version": ">= 1.27.1",
      "role": "Imports"
    },
    {
      "package": "DBI",
      "version": ">= 0.3.1",
      "role": "Imports"
    },
    {
      "package": "methods",
      "version": ">= 3.6.2",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_userbio": {
    "uuid": 74666632,
    "type": "organization",
    "name": "DCI Bioinformatics Shared Resource",
    "followers": 3
  },
  "_downloads": {
    "count": 374,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/snplist"
  },
  "_mentions": 2,
  "_searchresults": 22,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/snplist.html"
  ],
  "_realowner": "dcibioinformatics",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.12",
      "date": "2013-11-26"
    },
    {
      "version": "0.13",
      "date": "2014-12-10"
    },
    {
      "version": "0.14",
      "date": "2015-09-21"
    },
    {
      "version": "0.15",
      "date": "2015-11-20"
    },
    {
      "version": "0.16",
      "date": "2016-10-27"
    },
    {
      "version": "0.17",
      "date": "2016-12-13"
    },
    {
      "version": "0.18",
      "date": "2017-08-14"
    },
    {
      "version": "0.18.1",
      "date": "2017-12-11"
    },
    {
      "version": "0.18.2",
      "date": "2021-10-09"
    },
    {
      "version": "0.18.3",
      "date": "2025-04-21"
    }
  ],
  "_exports": [
    "exportPLINKSet",
    "getBioMartData",
    "makeGeneSet",
    "setGeneTable",
    "setSNPTable"
  ],
  "_help": [
    {
      "page": "snplist-package",
      "title": "Tools to Create Gene Sets",
      "topics": [
        "snplist-package",
        "snplist"
      ]
    },
    {
      "page": "exportPLINKSet",
      "title": "exportPLINKSet",
      "topics": [
        "exportPLINKSet"
      ]
    },
    {
      "page": "getBioMartData",
      "title": "getBioMartData",
      "topics": [
        "getBioMartData"
      ]
    },
    {
      "page": "makeGeneSet",
      "title": "makeGeneSet",
      "topics": [
        "makeGeneSet"
      ]
    },
    {
      "page": "setGeneTable",
      "title": "setGeneTable",
      "topics": [
        "setGeneTable"
      ]
    },
    {
      "page": "setSNPTable",
      "title": "setSNPTable",
      "topics": [
        "setSNPTable"
      ]
    }
  ],
  "_rundeps": [
    "AnnotationDbi",
    "askpass",
    "Biobase",
    "BiocBaseUtils",
    "BiocFileCache",
    "BiocGenerics",
    "biomaRt",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dbplyr",
    "dplyr",
    "fastmap",
    "filelock",
    "generics",
    "glue",
    "hms",
    "httr",
    "httr2",
    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "png",
    "prettyunits",
    "progress",
    "purrr",
    "R.methodsS3",
    "R.oo",
    "R.utils",
    "R6",
    "Rcpp",
    "rlang",
    "RSQLite",
    "S4Vectors",
    "Seqinfo",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr",
    "xml2",
    "XVector"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "snplist.Rnw",
      "filename": "snplist.pdf",
      "title": "snplist",
      "engine": "knitr::knitr",
      "headings": [
        "Introduction",
        "Get Gene and SNP Information",
        "Load Packages",
        "Set the Gene Info Table",
        "Set the SNP Info Table",
        "Make the SNP Sets",
        "Save the Gene Sets",
        "​"
      ],
      "created": "2013-11-22",
      "modified": "2025-04-21 18:40:02",
      "commits": 10
    }
  ],
  "_score": 2.6434526764861874,
  "_indexed": true,
  "_nocasepkg": "snplist",
  "_universes": [
    "dcibioinformatics"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.18.3",
      "date": "2026-10-03T09:00:52.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "940c55fbeb13a5675d5eaeb20eda1c8885001e39",
      "fileid": "https://r2.ropensci.org/a074006f2be9918786973e5e414b47e5aa0ae9c8345e729807918b99c6cf5f6d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dcibioinformatics/actions/runs/37111244262"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.18.3",
      "date": "2026-10-03T09:01:01.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "940c55fbeb13a5675d5eaeb20eda1c8885001e39",
      "fileid": "https://r2.ropensci.org/afa9c60c27ab201305aa5f1f046bd44c49091c895fd9509f2f4cd052397e541d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dcibioinformatics/actions/runs/37111244262"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.18.3",
      "date": "2026-10-03T09:00:53.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "940c55fbeb13a5675d5eaeb20eda1c8885001e39",
      "fileid": "https://r2.ropensci.org/c2960faafc0c5c8de3e290a6c4193c00d83e4b8f6df3340ad44e8cd1f444dff7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dcibioinformatics/actions/runs/37111244262"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.18.3",
      "date": "2026-10-03T09:01:00.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "940c55fbeb13a5675d5eaeb20eda1c8885001e39",
      "fileid": "https://r2.ropensci.org/dedfd314d8604be5f93890e619331e17243b7ecfbb6a1445b92bab112e419e75",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dcibioinformatics/actions/runs/37111244262"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.18.3",
      "date": "2026-10-03T09:00:42.000Z",
      "arch": "aarch64",
      "commit": "940c55fbeb13a5675d5eaeb20eda1c8885001e39",
      "fileid": "https://r2.ropensci.org/497c53bcb28b24c870a9aa3f91ecaf3037f92d9beeeaec3d2397f60c4194ca47",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dcibioinformatics/actions/runs/37111244262"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.18.3",
      "date": "2026-10-03T09:01:16.000Z",
      "arch": "x86_64",
      "commit": "940c55fbeb13a5675d5eaeb20eda1c8885001e39",
      "fileid": "https://r2.ropensci.org/70c168fad31306e8f7fb878a810f35652956e3337038375077cec4d8c1593398",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dcibioinformatics/actions/runs/37111244262"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.18.3",
      "date": "2026-10-03T09:00:19.000Z",
      "arch": "aarch64",
      "commit": "940c55fbeb13a5675d5eaeb20eda1c8885001e39",
      "fileid": "https://r2.ropensci.org/2a2070c703d42fcfe4761e30180ad0d57fc15edc2240a5e33520f7627e725f7a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dcibioinformatics/actions/runs/37111244262"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.18.3",
      "date": "2026-10-03T09:03:54.000Z",
      "arch": "x86_64",
      "commit": "940c55fbeb13a5675d5eaeb20eda1c8885001e39",
      "fileid": "https://r2.ropensci.org/320d57fbf4cf5c17c211fd96dd52b72ef9d09c2f806518518df57c45a8f2ec49",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dcibioinformatics/actions/runs/37111244262"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.18.3",
      "date": "2026-10-03T09:01:01.000Z",
      "arch": "emscripten",
      "commit": "940c55fbeb13a5675d5eaeb20eda1c8885001e39",
      "fileid": "https://r2.ropensci.org/b4d34593af2d6d837111174781f6836453fae63cc6e0e92bd509528f2bfc5aa7",
      "status": "success",
      "buildurl": "https://github.com/r-universe/dcibioinformatics/actions/runs/37111244262"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.18.3",
      "date": "2026-10-03T09:02:04.000Z",
      "arch": "aarch64",
      "commit": "940c55fbeb13a5675d5eaeb20eda1c8885001e39",
      "fileid": "https://r2.ropensci.org/e3ec105a4620b5590ddcdceaa37aa5b2d6b2da5c0cd7a84e30f47c2e9d3d27b5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dcibioinformatics/actions/runs/37111244262"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.18.3",
      "date": "2026-10-03T08:59:55.000Z",
      "arch": "x86_64",
      "commit": "940c55fbeb13a5675d5eaeb20eda1c8885001e39",
      "fileid": "https://r2.ropensci.org/e6aeabd845e71a7ff9b8075269b4670328d73fc4ffc37f57a4f3b570ad1c7fde",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dcibioinformatics/actions/runs/37111244262"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.18.3",
      "date": "2026-10-03T08:59:57.000Z",
      "arch": "x86_64",
      "commit": "940c55fbeb13a5675d5eaeb20eda1c8885001e39",
      "fileid": "https://r2.ropensci.org/3fea8623d8e3a23cfe044575b7fb350833ab6076ad587cb36bc6d37d968cabb8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dcibioinformatics/actions/runs/37111244262"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.18.3",
      "date": "2026-10-03T09:01:45.000Z",
      "arch": "aarch64",
      "commit": "940c55fbeb13a5675d5eaeb20eda1c8885001e39",
      "fileid": "https://r2.ropensci.org/458e8fe152fd8f8e59d99ceedcf2dd4932958390693ca712f93052603808026f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dcibioinformatics/actions/runs/37111244262"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.18.3",
      "date": "2026-10-03T08:59:58.000Z",
      "arch": "x86_64",
      "commit": "940c55fbeb13a5675d5eaeb20eda1c8885001e39",
      "fileid": "https://r2.ropensci.org/ac529a0b342ef19c78d96a16b87fd87ec3c4f59b344d99ebda0b0a499259b0b6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dcibioinformatics/actions/runs/37111244262"
    }
  ]
}